me.shadaj.genalgo.scoring

BLOSUM62

Related Docs: object BLOSUM62 | package scoring

class BLOSUM62 extends ScoringMatrix[AminoAcid]

Linear Supertypes
ScoringMatrix[AminoAcid], Serializable, Serializable, AnyRef, Any
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  1. BLOSUM62
  2. ScoringMatrix
  3. Serializable
  4. Serializable
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Instance Constructors

  1. new BLOSUM62(indelPenalty: Int)

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  10. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  11. val indelPenalty: Int

    Definition Classes
    BLOSUM62ScoringMatrix
  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  16. def score(b1: AminoAcid, b2: AminoAcid): Int

    Definition Classes
    BLOSUM62ScoringMatrix
  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  18. def toString(): String

    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
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    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ScoringMatrix[AminoAcid]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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