me.shadaj.genalgo

sequences

package sequences

Visibility
  1. Public
  2. All

Type Members

  1. trait AminoAcid extends BaseLike

  2. trait Base extends BaseLike

  3. trait BaseLike extends AnyRef

  4. trait BioSequence[B <: BaseLike] extends IndexedSeq[B] with Serializable

  5. trait Charged extends AnyRef

  6. final class DNA extends BioSequence[DNABase] with IndexedSeqLike[DNABase, DNA]

  7. trait DNABase extends Base

  8. trait Hydrophilic extends AnyRef

  9. trait Hydrophobic extends AnyRef

  10. trait NegativelyCharged extends Charged

  11. trait PositivelyCharged extends Charged

  12. final class Protein extends BioSequence[AminoAcid] with IndexedSeqLike[AminoAcid, Protein]

  13. final class RNA extends BioSequence[RNABase] with IndexedSeqLike[RNABase, RNA]

  14. trait RNABase extends Base

Value Members

  1. object A extends DNABase with RNABase with Product with Serializable

  2. object Ala extends AminoAcid with Hydrophobic

  3. object AminoAcid

  4. object Arg extends AminoAcid with PositivelyCharged

  5. object Asn extends AminoAcid with Hydrophilic

  6. object Asp extends AminoAcid with NegativelyCharged

  7. object Base

  8. object C extends DNABase with RNABase with Product with Serializable

  9. object Cys extends AminoAcid with Hydrophilic

  10. object DNA extends Serializable

  11. object DNABase

  12. object G extends DNABase with RNABase with Product with Serializable

  13. object Gln extends AminoAcid with Hydrophilic

  14. object Glu extends AminoAcid with NegativelyCharged

  15. object Gly extends AminoAcid with Hydrophilic

  16. object His extends AminoAcid with PositivelyCharged

  17. object Ile extends AminoAcid with Hydrophobic

  18. object Indel extends BaseLike with Product with Serializable

  19. object Leu extends AminoAcid with Hydrophobic

  20. object Lys extends AminoAcid with PositivelyCharged

  21. object Met extends AminoAcid with Hydrophobic

  22. object Phe extends AminoAcid with Hydrophobic

  23. object Pro extends AminoAcid with Hydrophobic

  24. object Protein extends Serializable

  25. object RNA extends Serializable

  26. object RNABase

  27. object Ser extends AminoAcid with Hydrophilic

  28. object Stop extends AminoAcid

  29. object T extends DNABase with Product with Serializable

  30. object Thr extends AminoAcid with Hydrophilic

  31. object Trp extends AminoAcid with Hydrophobic

  32. object Tyr extends AminoAcid with Hydrophilic

  33. object U extends RNABase with Product with Serializable

  34. object Val extends AminoAcid with Hydrophobic

Ungrouped