me
.
shadaj
.
genalgo
.
alignment
AlignmentSequence
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class AlignmentSequence
|
package alignment
object
AlignmentSequence
Linear Supertypes
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AlignmentSequence
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Public
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Type Members
type
AlignmentBase
[
B
]
=
Either
[
B
,
Indel
.type]
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
builder
[
B <:
BaseLike
,
OC <:
BioSequence
[
B
]
]
(
builder:
Builder
[
B
,
OC
]
)
:
Builder
[
AlignmentBase
[
B
],
AlignmentSequence
[
B
]]
implicit
def
canBuildFrom
[
B <:
BaseLike
,
OC <:
BioSequence
[
B
]
]
:
CanBuildFrom
[
AlignmentSequence
[
B
],
AlignmentBase
[
B
],
AlignmentSequence
[
B
]] { def apply(): collection.TraversableView.NoBuilder[me.shadaj.genalgo.alignment.AlignmentSequence.AlignmentBase[B]] }
def
clone
()
:
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Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
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def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
classOf[java.lang.Throwable]
)
def
fromSeq
[
B <:
BaseLike
,
OC <:
BioSequence
[
B
]
]
(
seq:
IndexedSeq
[
AlignmentBase
[
B
]]
,
builder:
Builder
[
B
,
OC
]
)
:
AlignmentSequence
[
B
]
final
def
getClass
()
:
Class
[_]
Definition Classes
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def
hashCode
()
:
Int
Definition Classes
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final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
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final
def
notify
()
:
Unit
Definition Classes
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final
def
notifyAll
()
:
Unit
Definition Classes
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final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
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def
toString
()
:
String
Definition Classes
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final
def
wait
()
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
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@throws
(
...
)
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