1. me
   1. me.shadaj
      1. me.shadaj.genalgo
         1. (object)
            Resources
         1. me.shadaj.genalgo.alignment
            1. (class)Alignment
            2. (object)(class)AlignmentSequence
            3. (trait)AlignmentStrategy
            4. (object)
               GlobalAlignment
            5. (object)
               LocalAlignment
         2. me.shadaj.genalgo.codontable
            1. (trait)CodonTable
            2. (object)
               StandardTable
            3. (object)
               VertebrateMitochondrialTable
         3. me.shadaj.genalgo.fasta
            1. (case class)FASTA
            2. (object)
               FASTAParser
         4. me.shadaj.genalgo.network
            1. (object)
               Requester
            2. (trait)RequestMaker
         5. me.shadaj.genalgo.proteins
            1. (object)
               ProteinWeights
         6. me.shadaj.genalgo.reconstruction
            1. (class)ConvolutionLeaderboardSequencing
            2. (trait)CyclopeptideSequencer
         7. me.shadaj.genalgo.scoring
            1. (object)(class)BLOSUM62
            2. (object)(class)PAM250
            3. (trait)ScoringMatrix
         8. me.shadaj.genalgo.sequences
            1. (object)
               A
            2. (object)
               Ala
            3. (object)(trait)AminoAcid
            4. (object)
               Arg
            5. (object)
               Asn
            6. (object)
               Asp
            7. (object)(trait)Base
            8. (trait)BaseLike
            9. (trait)BioSequence
            10. (object)
                C
            11. (trait)Charged
            12. (object)
                Cys
            13. (object)(class)DNA
            14. (object)(trait)DNABase
            15. (object)
                G
            16. (object)
                Gln
            17. (object)
                Glu
            18. (object)
                Gly
            19. (object)
                His
            20. (trait)Hydrophilic
            21. (trait)Hydrophobic
            22. (object)
                Ile
            23. (object)
                Indel
            24. (object)
                Leu
            25. (object)
                Lys
            26. (object)
                Met
            27. (trait)NegativelyCharged
            28. (object)
                Phe
            29. (trait)PositivelyCharged
            30. (object)
                Pro
            31. (object)(class)Protein
            32. (object)(class)RNA
            33. (object)(trait)RNABase
            34. (object)
                Ser
            35. (object)
                Stop
            36. (object)
                T
            37. (object)
                Thr
            38. (object)
                Trp
            39. (object)
                Tyr
            40. (object)
                U
            41. (object)
                Val
         9. me.shadaj.genalgo.uniprot
            1. (object)
               Uniprot
         10. me.shadaj.genalgo.util
             1. (object)(class)BitStorage
             2. (object)
                Util