me.shadaj.genalgo.alignment

LocalAlignment

Related Doc: package alignment

object LocalAlignment extends AlignmentStrategy

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AlignmentStrategy, AnyRef, Any
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  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. def align[B <: BaseLike, C <: BioSequence[B] with IndexedSeqLike[B, C]](seq1: C, seq2: C, scorer: ScoringMatrix[B]): Alignment[B, C]

    Definition Classes
    LocalAlignment → AlignmentStrategy

  5. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  14. final def notify(): Unit

    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  17. def toString(): String

    Definition Classes
    AnyRef → Any

  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AlignmentStrategy

Inherited from AnyRef

Inherited from Any

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