me.shadaj.genalgo.sequences

DNA

Related Docs: object DNA | package sequences

final class DNA extends BioSequence[DNABase] with IndexedSeqLike[DNABase, DNA]

Linear Supertypes
BioSequence[DNABase], Serializable, Serializable, IndexedSeq[DNABase], IndexedSeqLike[DNABase, DNA], Seq[DNABase], SeqLike[DNABase, DNA], GenSeq[DNABase], GenSeqLike[DNABase, DNA], Iterable[DNABase], IterableLike[DNABase, DNA], Equals, GenIterable[DNABase], GenIterableLike[DNABase, DNA], Traversable[DNABase], GenTraversable[DNABase], GenericTraversableTemplate[DNABase, IndexedSeq], TraversableLike[DNABase, DNA], GenTraversableLike[DNABase, DNA], Parallelizable[DNABase, ParSeq[DNABase]], TraversableOnce[DNABase], GenTraversableOnce[DNABase], FilterMonadic[DNABase, DNA], HasNewBuilder[DNABase, DNA], PartialFunction[Int, DNABase], (Int) ⇒ DNABase, AnyRef, Any
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Inherited
  1. DNA
  2. BioSequence
  3. Serializable
  4. Serializable
  5. IndexedSeq
  6. IndexedSeqLike
  7. Seq
  8. SeqLike
  9. GenSeq
  10. GenSeqLike
  11. Iterable
  12. IterableLike
  13. Equals
  14. GenIterable
  15. GenIterableLike
  16. Traversable
  17. GenTraversable
  18. GenericTraversableTemplate
  19. TraversableLike
  20. GenTraversableLike
  21. Parallelizable
  22. TraversableOnce
  23. GenTraversableOnce
  24. FilterMonadic
  25. HasNewBuilder
  26. PartialFunction
  27. Function1
  28. AnyRef
  29. Any
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Type Members

  1. type C = DNA

    Definition Classes
    DNA → BioSequence

  2. class Elements extends AbstractIterator[A] with BufferedIterator[A] with Serializable

    Attributes
    protected
    Definition Classes
    IndexedSeqLike
    Annotations
    @SerialVersionUID()

  3. type Self = DNA

    Attributes
    protected[this]
    Definition Classes
    TraversableLike

  4. class WithFilter extends FilterMonadic[A, Repr]

    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. def ++[B >: DNABase, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  4. def ++:[B >: DNABase, That](that: Traversable[B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike

  5. def ++:[B >: DNABase, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike

  6. def +:[B >: DNABase, That](elem: B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  7. def /:[B](z: B)(op: (B, DNABase) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  8. def :+[B >: DNABase, That](elem: B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  9. def :\[B](z: B)(op: (DNABase, B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  10. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  11. def addString(b: StringBuilder): StringBuilder

    Definition Classes
    TraversableOnce

  12. def addString(b: StringBuilder, sep: String): StringBuilder

    Definition Classes
    TraversableOnce

  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

    Definition Classes
    TraversableOnce

  14. def aggregate[B](z: ⇒ B)(seqop: (B, DNABase) ⇒ B, combop: (B, B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  15. def align(that: C, scorer: ScoringMatrix[DNABase])(implicit strategy: AlignmentStrategy): Alignment[DNABase, C]

    Definition Classes
    BioSequence

  16. def andThen[C](k: (DNABase) ⇒ C): PartialFunction[Int, C]

    Definition Classes
    PartialFunction → Function1

  17. def apply(index: Int): DNABase

    Definition Classes
    DNA → SeqLike → GenSeqLike → Function1

  18. def applyOrElse[A1 <: Int, B1 >: DNABase](x: A1, default: (A1) ⇒ B1): B1

    Definition Classes
    PartialFunction

  19. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  20. def canEqual(that: Any): Boolean

    Definition Classes
    IterableLike → Equals

  21. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. def collect[B, That](pf: PartialFunction[DNABase, B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  23. def collectFirst[B](pf: PartialFunction[DNABase, B]): Option[B]

    Definition Classes
    TraversableOnce

  24. def combinations(n: Int): Iterator[DNA]

    Definition Classes
    SeqLike

  25. def companion: GenericCompanion[IndexedSeq]

    Definition Classes
    IndexedSeq → Seq → GenSeq → Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate

  26. def complement: DNA

  27. def compose[A](g: (A) ⇒ Int): (A) ⇒ DNABase

    Definition Classes
    Function1
    Annotations
    @unspecialized()

  28. def contains[A1 >: DNABase](elem: A1): Boolean

    Definition Classes
    SeqLike

  29. def containsSlice[B](that: GenSeq[B]): Boolean

    Definition Classes
    SeqLike

  30. def copyToArray[B >: DNABase](xs: Array[B], start: Int, len: Int): Unit

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  31. def copyToArray[B >: DNABase](xs: Array[B]): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  32. def copyToArray[B >: DNABase](xs: Array[B], start: Int): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  33. def copyToBuffer[B >: DNABase](dest: Buffer[B]): Unit

    Definition Classes
    TraversableOnce

  34. def corresponds[B](that: GenSeq[B])(p: (DNABase, B) ⇒ Boolean): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  35. def count(p: (DNABase) ⇒ Boolean): Int

    Definition Classes
    TraversableOnce → GenTraversableOnce

  36. def diff[B >: DNABase](that: GenSeq[B]): DNA

    Definition Classes
    SeqLike → GenSeqLike

  37. def distinct: DNA

    Definition Classes
    SeqLike → GenSeqLike

  38. def drop(n: Int): DNA

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  39. def dropRight(n: Int): DNA

    Definition Classes
    IterableLike

  40. def dropWhile(p: (DNABase) ⇒ Boolean): DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  41. def endsWith[B](that: GenSeq[B]): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  42. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  43. def equals(that: Any): Boolean

    Definition Classes
    GenSeqLike → Equals → Any

  44. def exists(p: (DNABase) ⇒ Boolean): Boolean

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  45. def filter(p: (DNABase) ⇒ Boolean): DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  46. def filterNot(p: (DNABase) ⇒ Boolean): DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  47. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  48. def find(p: (DNABase) ⇒ Boolean): Option[DNABase]

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  49. def flatMap[B, That](f: (DNABase) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic

  50. def flatten[B](implicit asTraversable: (DNABase) ⇒ GenTraversableOnce[B]): IndexedSeq[B]

    Definition Classes
    GenericTraversableTemplate

  51. def fold[A1 >: DNABase](z: A1)(op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  52. def foldLeft[B](z: B)(op: (B, DNABase) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  53. def foldRight[B](z: B)(op: (DNABase, B) ⇒ B): B

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  54. def forall(p: (DNABase) ⇒ Boolean): Boolean

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  55. def foreach[U](f: (DNABase) ⇒ U): Unit

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic

  56. def genericBuilder[B]: Builder[B, IndexedSeq[B]]

    Definition Classes
    GenericTraversableTemplate

  57. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  58. def groupBy[K](f: (DNABase) ⇒ K): Map[K, DNA]

    Definition Classes
    TraversableLike → GenTraversableLike

  59. def grouped(size: Int): Iterator[DNA]

    Definition Classes
    IterableLike

  60. def hammingDistance(that: C): Int

    Definition Classes
    BioSequence

  61. def hasDefiniteSize: Boolean

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce

  62. def hashCode(): Int

    Definition Classes
    IndexedSeqLike → GenSeqLike → Any

  63. def head: DNABase

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  64. def headOption: Option[DNABase]

    Definition Classes
    TraversableLike → GenTraversableLike

  65. def indexOf[B >: DNABase](elem: B, from: Int): Int

    Definition Classes
    GenSeqLike

  66. def indexOf[B >: DNABase](elem: B): Int

    Definition Classes
    GenSeqLike

  67. def indexOfSlice[B >: DNABase](that: GenSeq[B], from: Int): Int

    Definition Classes
    SeqLike

  68. def indexOfSlice[B >: DNABase](that: GenSeq[B]): Int

    Definition Classes
    SeqLike

  69. def indexWhere(p: (DNABase) ⇒ Boolean, from: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  70. def indexWhere(p: (DNABase) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  71. def indices: Range

    Definition Classes
    SeqLike

  72. def init: DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  73. def inits: Iterator[DNA]

    Definition Classes
    TraversableLike

  74. def intersect[B >: DNABase](that: GenSeq[B]): DNA

    Definition Classes
    SeqLike → GenSeqLike

  75. def isDefinedAt(idx: Int): Boolean

    Definition Classes
    GenSeqLike

  76. def isEmpty: Boolean

    Definition Classes
    SeqLike → IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  77. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  78. final def isTraversableAgain: Boolean

    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce

  79. def iterator: Iterator[DNABase]

    Definition Classes
    IndexedSeqLike → IterableLike → GenIterableLike

  80. def last: DNABase

    Definition Classes
    TraversableLike → GenTraversableLike

  81. def lastIndexOf[B >: DNABase](elem: B, end: Int): Int

    Definition Classes
    GenSeqLike

  82. def lastIndexOf[B >: DNABase](elem: B): Int

    Definition Classes
    GenSeqLike

  83. def lastIndexOfSlice[B >: DNABase](that: GenSeq[B], end: Int): Int

    Definition Classes
    SeqLike

  84. def lastIndexOfSlice[B >: DNABase](that: GenSeq[B]): Int

    Definition Classes
    SeqLike

  85. def lastIndexWhere(p: (DNABase) ⇒ Boolean, end: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  86. def lastIndexWhere(p: (DNABase) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  87. def lastOption: Option[DNABase]

    Definition Classes
    TraversableLike → GenTraversableLike

  88. val length: Int

    Definition Classes
    DNA → SeqLike → GenSeqLike

  89. def lengthCompare(len: Int): Int

    Definition Classes
    SeqLike

  90. def lift: (Int) ⇒ Option[DNABase]

    Definition Classes
    PartialFunction

  91. def map[B, That](f: (DNABase) ⇒ B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic

  92. def max[B >: DNABase](implicit cmp: Ordering[B]): DNABase

    Definition Classes
    TraversableOnce → GenTraversableOnce

  93. def maxBy[B](f: (DNABase) ⇒ B)(implicit cmp: Ordering[B]): DNABase

    Definition Classes
    TraversableOnce → GenTraversableOnce

  94. def min[B >: DNABase](implicit cmp: Ordering[B]): DNABase

    Definition Classes
    TraversableOnce → GenTraversableOnce

  95. def minBy[B](f: (DNABase) ⇒ B)(implicit cmp: Ordering[B]): DNABase

    Definition Classes
    TraversableOnce → GenTraversableOnce

  96. def mkString: String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  97. def mkString(sep: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  98. def mkString(start: String, sep: String, end: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  99. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  100. final def newBuilder: Builder[DNABase, C]

    Definition Classes
    BioSequence → GenericTraversableTemplate → TraversableLike → HasNewBuilder

  101. def nonEmpty: Boolean

    Definition Classes
    TraversableOnce → GenTraversableOnce

  102. final def notify(): Unit

    Definition Classes
    AnyRef

  103. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  104. def orElse[A1 <: Int, B1 >: DNABase](that: PartialFunction[A1, B1]): PartialFunction[A1, B1]

    Definition Classes
    PartialFunction

  105. def padTo[B >: DNABase, That](len: Int, elem: B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  106. def par: ParSeq[DNABase]

    Definition Classes
    Parallelizable

  107. def parCombiner: Combiner[DNABase, ParSeq[DNABase]]

    Attributes
    protected[this]
    Definition Classes
    SeqLike → TraversableLike → Parallelizable

  108. def partition(p: (DNABase) ⇒ Boolean): (DNA, DNA)

    Definition Classes
    TraversableLike → GenTraversableLike

  109. def patch[B >: DNABase, That](from: Int, patch: GenSeq[B], replaced: Int)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  110. def permutations: Iterator[DNA]

    Definition Classes
    SeqLike

  111. def prefixLength(p: (DNABase) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  112. def product[B >: DNABase](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  113. def reduce[A1 >: DNABase](op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  114. def reduceLeft[B >: DNABase](op: (B, DNABase) ⇒ B): B

    Definition Classes
    TraversableOnce

  115. def reduceLeftOption[B >: DNABase](op: (B, DNABase) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  116. def reduceOption[A1 >: DNABase](op: (A1, A1) ⇒ A1): Option[A1]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  117. def reduceRight[B >: DNABase](op: (DNABase, B) ⇒ B): B

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  118. def reduceRightOption[B >: DNABase](op: (DNABase, B) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  119. def repr: DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  120. def reverse: DNA

    Definition Classes
    SeqLike → GenSeqLike

  121. def reverseComplement: DNA

  122. def reverseIterator: Iterator[DNABase]

    Definition Classes
    SeqLike

  123. def reverseMap[B, That](f: (DNABase) ⇒ B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  124. def reversed: List[DNABase]

    Attributes
    protected[this]
    Definition Classes
    TraversableOnce

  125. def runWith[U](action: (DNABase) ⇒ U): (Int) ⇒ Boolean

    Definition Classes
    PartialFunction

  126. def sameElements[B >: DNABase](that: GenIterable[B]): Boolean

    Definition Classes
    IterableLike → GenIterableLike

  127. def scan[B >: DNABase, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  128. def scanLeft[B, That](z: B)(op: (B, DNABase) ⇒ B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  129. def scanRight[B, That](z: B)(op: (DNABase, B) ⇒ B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  130. def segmentLength(p: (DNABase) ⇒ Boolean, from: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  131. def self: DNA

    Definition Classes
    DNA → BioSequence

  132. def seq: IndexedSeq[DNABase]

    Definition Classes
    IndexedSeq → IndexedSeqLike → Seq → GenSeq → GenSeqLike → Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce

  133. def seqBuilder: Builder[DNABase, DNA]

    Definition Classes
    DNA → BioSequence

  134. def size: Int

    Definition Classes
    SeqLike → GenTraversableLike → TraversableOnce → GenTraversableOnce

  135. def slice(from: Int, until: Int): DNA

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  136. def sliding(size: Int, step: Int): Iterator[DNA]

    Definition Classes
    IterableLike

  137. def sliding(size: Int): Iterator[DNA]

    Definition Classes
    IterableLike

  138. def sortBy[B](f: (DNABase) ⇒ B)(implicit ord: Ordering[B]): DNA

    Definition Classes
    SeqLike

  139. def sortWith(lt: (DNABase, DNABase) ⇒ Boolean): DNA

    Definition Classes
    SeqLike

  140. def sorted[B >: DNABase](implicit ord: Ordering[B]): DNA

    Definition Classes
    SeqLike

  141. def span(p: (DNABase) ⇒ Boolean): (DNA, DNA)

    Definition Classes
    TraversableLike → GenTraversableLike

  142. def splitAt(n: Int): (DNA, DNA)

    Definition Classes
    TraversableLike → GenTraversableLike

  143. def startsWith[B](that: GenSeq[B], offset: Int): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  144. def startsWith[B](that: GenSeq[B]): Boolean

    Definition Classes
    GenSeqLike

  145. def stringPrefix: String

    Definition Classes
    TraversableLike → GenTraversableLike

  146. def sum[B >: DNABase](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  147. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  148. def tail: DNA

    Definition Classes
    TraversableLike → GenTraversableLike

  149. def tails: Iterator[DNA]

    Definition Classes
    TraversableLike

  150. def take(n: Int): DNA

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  151. def takeRight(n: Int): DNA

    Definition Classes
    IterableLike

  152. def takeWhile(p: (DNABase) ⇒ Boolean): DNA

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  153. def thisCollection: IndexedSeq[DNABase]

    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike

  154. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, DNABase, Col[DNABase]]): Col[DNABase]

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce

  155. def toArray[B >: DNABase](implicit arg0: ClassTag[B]): Array[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  156. def toBuffer[A1 >: DNABase]: Buffer[A1]

    Definition Classes
    IndexedSeqLike → TraversableOnce → GenTraversableOnce

  157. def toCollection(repr: DNA): IndexedSeq[DNABase]

    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike

  158. def toIndexedSeq: IndexedSeq[DNABase]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  159. def toIterable: Iterable[DNABase]

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  160. def toIterator: Iterator[DNABase]

    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )

  161. def toList: List[DNABase]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  162. def toMap[T, U](implicit ev: <:<[DNABase, (T, U)]): Map[T, U]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  163. def toRNA: RNA

  164. def toSeq: Seq[DNABase]

    Definition Classes
    SeqLike → GenSeqLike → TraversableOnce → GenTraversableOnce

  165. def toSet[B >: DNABase]: Set[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  166. def toStream: Stream[DNABase]

    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce

  167. def toString(): String

    Definition Classes
    BioSequence → SeqLike → TraversableLike → Function1 → AnyRef → Any

  168. def toTraversable: Traversable[DNABase]

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )

  169. def toVector: Vector[DNABase]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  170. def transpose[B](implicit asTraversable: (DNABase) ⇒ GenTraversableOnce[B]): IndexedSeq[IndexedSeq[B]]

    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  171. def union[B >: DNABase, That](that: GenSeq[B])(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  172. def unzip[A1, A2](implicit asPair: (DNABase) ⇒ (A1, A2)): (IndexedSeq[A1], IndexedSeq[A2])

    Definition Classes
    GenericTraversableTemplate

  173. def unzip3[A1, A2, A3](implicit asTriple: (DNABase) ⇒ (A1, A2, A3)): (IndexedSeq[A1], IndexedSeq[A2], IndexedSeq[A3])

    Definition Classes
    GenericTraversableTemplate

  174. def updated[B >: DNABase, That](index: Int, elem: B)(implicit bf: CanBuildFrom[DNA, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  175. def view(from: Int, until: Int): SeqView[DNABase, DNA]

    Definition Classes
    SeqLike → IterableLike → TraversableLike

  176. def view: SeqView[DNABase, DNA]

    Definition Classes
    SeqLike → IterableLike → TraversableLike

  177. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  178. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  179. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  180. def withFilter(p: (DNABase) ⇒ Boolean): FilterMonadic[DNABase, DNA]

    Definition Classes
    TraversableLike → FilterMonadic

  181. def zip[A1 >: DNABase, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[DNA, (A1, B), That]): That

    Definition Classes
    IterableLike → GenIterableLike

  182. def zipAll[B, A1 >: DNABase, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[DNA, (A1, B), That]): That

    Definition Classes
    IterableLike → GenIterableLike

  183. def zipWithIndex[A1 >: DNABase, That](implicit bf: CanBuildFrom[DNA, (A1, Int), That]): That

    Definition Classes
    IterableLike → GenIterableLike

Inherited from BioSequence[DNABase]

Inherited from Serializable

Inherited from Serializable

Inherited from IndexedSeq[DNABase]

Inherited from IndexedSeqLike[DNABase, DNA]

Inherited from Seq[DNABase]

Inherited from SeqLike[DNABase, DNA]

Inherited from GenSeq[DNABase]

Inherited from GenSeqLike[DNABase, DNA]

Inherited from Iterable[DNABase]

Inherited from IterableLike[DNABase, DNA]

Inherited from Equals

Inherited from GenIterable[DNABase]

Inherited from GenIterableLike[DNABase, DNA]

Inherited from Traversable[DNABase]

Inherited from GenTraversable[DNABase]

Inherited from GenericTraversableTemplate[DNABase, IndexedSeq]

Inherited from TraversableLike[DNABase, DNA]

Inherited from GenTraversableLike[DNABase, DNA]

Inherited from Parallelizable[DNABase, ParSeq[DNABase]]

Inherited from TraversableOnce[DNABase]

Inherited from GenTraversableOnce[DNABase]

Inherited from FilterMonadic[DNABase, DNA]

Inherited from HasNewBuilder[DNABase, DNA]

Inherited from PartialFunction[Int, DNABase]

Inherited from (Int) ⇒ DNABase

Inherited from AnyRef

Inherited from Any

Ungrouped