me.shadaj.genalgo.sequences

Protein

Related Docs: object Protein | package sequences

final class Protein extends BioSequence[AminoAcid] with IndexedSeqLike[AminoAcid, Protein]

Linear Supertypes
BioSequence[AminoAcid], Serializable, Serializable, IndexedSeq[AminoAcid], IndexedSeqLike[AminoAcid, Protein], Seq[AminoAcid], SeqLike[AminoAcid, Protein], GenSeq[AminoAcid], GenSeqLike[AminoAcid, Protein], Iterable[AminoAcid], IterableLike[AminoAcid, Protein], Equals, GenIterable[AminoAcid], GenIterableLike[AminoAcid, Protein], Traversable[AminoAcid], GenTraversable[AminoAcid], GenericTraversableTemplate[AminoAcid, IndexedSeq], TraversableLike[AminoAcid, Protein], GenTraversableLike[AminoAcid, Protein], Parallelizable[AminoAcid, ParSeq[AminoAcid]], TraversableOnce[AminoAcid], GenTraversableOnce[AminoAcid], FilterMonadic[AminoAcid, Protein], HasNewBuilder[AminoAcid, Protein], PartialFunction[Int, AminoAcid], (Int) ⇒ AminoAcid, AnyRef, Any
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Inherited
  1. Protein
  2. BioSequence
  3. Serializable
  4. Serializable
  5. IndexedSeq
  6. IndexedSeqLike
  7. Seq
  8. SeqLike
  9. GenSeq
  10. GenSeqLike
  11. Iterable
  12. IterableLike
  13. Equals
  14. GenIterable
  15. GenIterableLike
  16. Traversable
  17. GenTraversable
  18. GenericTraversableTemplate
  19. TraversableLike
  20. GenTraversableLike
  21. Parallelizable
  22. TraversableOnce
  23. GenTraversableOnce
  24. FilterMonadic
  25. HasNewBuilder
  26. PartialFunction
  27. Function1
  28. AnyRef
  29. Any
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Type Members

  1. type C = Protein

    Definition Classes
    Protein → BioSequence

  2. class Elements extends AbstractIterator[A] with BufferedIterator[A] with Serializable

    Attributes
    protected
    Definition Classes
    IndexedSeqLike
    Annotations
    @SerialVersionUID()

  3. type Self = Protein

    Attributes
    protected[this]
    Definition Classes
    TraversableLike

  4. class WithFilter extends FilterMonadic[A, Repr]

    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. def ++[B >: AminoAcid, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  4. def ++:[B >: AminoAcid, That](that: Traversable[B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike

  5. def ++:[B >: AminoAcid, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike

  6. def +:[B >: AminoAcid, That](elem: B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  7. def /:[B](z: B)(op: (B, AminoAcid) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  8. def :+[B >: AminoAcid, That](elem: B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  9. def :\[B](z: B)(op: (AminoAcid, B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  10. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  11. def addString(b: StringBuilder): StringBuilder

    Definition Classes
    TraversableOnce

  12. def addString(b: StringBuilder, sep: String): StringBuilder

    Definition Classes
    TraversableOnce

  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

    Definition Classes
    TraversableOnce

  14. def aggregate[B](z: ⇒ B)(seqop: (B, AminoAcid) ⇒ B, combop: (B, B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  15. def align(that: C, scorer: ScoringMatrix[AminoAcid])(implicit strategy: AlignmentStrategy): Alignment[AminoAcid, C]

    Definition Classes
    BioSequence

  16. def andThen[C](k: (AminoAcid) ⇒ C): PartialFunction[Int, C]

    Definition Classes
    PartialFunction → Function1

  17. def apply(index: Int): AminoAcid

    Definition Classes
    Protein → SeqLike → GenSeqLike → Function1

  18. def applyOrElse[A1 <: Int, B1 >: AminoAcid](x: A1, default: (A1) ⇒ B1): B1

    Definition Classes
    PartialFunction

  19. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  20. def canEqual(that: Any): Boolean

    Definition Classes
    IterableLike → Equals

  21. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. def collect[B, That](pf: PartialFunction[AminoAcid, B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  23. def collectFirst[B](pf: PartialFunction[AminoAcid, B]): Option[B]

    Definition Classes
    TraversableOnce

  24. def combinations(n: Int): Iterator[Protein]

    Definition Classes
    SeqLike

  25. def companion: GenericCompanion[IndexedSeq]

    Definition Classes
    IndexedSeq → Seq → GenSeq → Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate

  26. def compose[A](g: (A) ⇒ Int): (A) ⇒ AminoAcid

    Definition Classes
    Function1
    Annotations
    @unspecialized()

  27. def contains[A1 >: AminoAcid](elem: A1): Boolean

    Definition Classes
    SeqLike

  28. def containsSlice[B](that: GenSeq[B]): Boolean

    Definition Classes
    SeqLike

  29. def copyToArray[B >: AminoAcid](xs: Array[B], start: Int, len: Int): Unit

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  30. def copyToArray[B >: AminoAcid](xs: Array[B]): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  31. def copyToArray[B >: AminoAcid](xs: Array[B], start: Int): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  32. def copyToBuffer[B >: AminoAcid](dest: Buffer[B]): Unit

    Definition Classes
    TraversableOnce

  33. def corresponds[B](that: GenSeq[B])(p: (AminoAcid, B) ⇒ Boolean): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  34. def count(p: (AminoAcid) ⇒ Boolean): Int

    Definition Classes
    TraversableOnce → GenTraversableOnce

  35. def diff[B >: AminoAcid](that: GenSeq[B]): Protein

    Definition Classes
    SeqLike → GenSeqLike

  36. def distinct: Protein

    Definition Classes
    SeqLike → GenSeqLike

  37. def drop(n: Int): Protein

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  38. def dropRight(n: Int): Protein

    Definition Classes
    IterableLike

  39. def dropWhile(p: (AminoAcid) ⇒ Boolean): Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  40. def endsWith[B](that: GenSeq[B]): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  41. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  42. def equals(that: Any): Boolean

    Definition Classes
    GenSeqLike → Equals → Any

  43. def exists(p: (AminoAcid) ⇒ Boolean): Boolean

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  44. def filter(p: (AminoAcid) ⇒ Boolean): Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  45. def filterNot(p: (AminoAcid) ⇒ Boolean): Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  46. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  47. def find(p: (AminoAcid) ⇒ Boolean): Option[AminoAcid]

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  48. def flatMap[B, That](f: (AminoAcid) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic

  49. def flatten[B](implicit asTraversable: (AminoAcid) ⇒ GenTraversableOnce[B]): IndexedSeq[B]

    Definition Classes
    GenericTraversableTemplate

  50. def fold[A1 >: AminoAcid](z: A1)(op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  51. def foldLeft[B](z: B)(op: (B, AminoAcid) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  52. def foldRight[B](z: B)(op: (AminoAcid, B) ⇒ B): B

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  53. def forall(p: (AminoAcid) ⇒ Boolean): Boolean

    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  54. def foreach[U](f: (AminoAcid) ⇒ U): Unit

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic

  55. def genericBuilder[B]: Builder[B, IndexedSeq[B]]

    Definition Classes
    GenericTraversableTemplate

  56. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  57. def groupBy[K](f: (AminoAcid) ⇒ K): Map[K, Protein]

    Definition Classes
    TraversableLike → GenTraversableLike

  58. def grouped(size: Int): Iterator[Protein]

    Definition Classes
    IterableLike

  59. def hammingDistance(that: C): Int

    Definition Classes
    BioSequence

  60. def hasDefiniteSize: Boolean

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce

  61. def hashCode(): Int

    Definition Classes
    IndexedSeqLike → GenSeqLike → Any

  62. def head: AminoAcid

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  63. def headOption: Option[AminoAcid]

    Definition Classes
    TraversableLike → GenTraversableLike

  64. def indexOf[B >: AminoAcid](elem: B, from: Int): Int

    Definition Classes
    GenSeqLike

  65. def indexOf[B >: AminoAcid](elem: B): Int

    Definition Classes
    GenSeqLike

  66. def indexOfSlice[B >: AminoAcid](that: GenSeq[B], from: Int): Int

    Definition Classes
    SeqLike

  67. def indexOfSlice[B >: AminoAcid](that: GenSeq[B]): Int

    Definition Classes
    SeqLike

  68. def indexWhere(p: (AminoAcid) ⇒ Boolean, from: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  69. def indexWhere(p: (AminoAcid) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  70. def indices: Range

    Definition Classes
    SeqLike

  71. def init: Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  72. def inits: Iterator[Protein]

    Definition Classes
    TraversableLike

  73. def intersect[B >: AminoAcid](that: GenSeq[B]): Protein

    Definition Classes
    SeqLike → GenSeqLike

  74. def isDefinedAt(idx: Int): Boolean

    Definition Classes
    GenSeqLike

  75. def isEmpty: Boolean

    Definition Classes
    SeqLike → IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce

  76. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  77. final def isTraversableAgain: Boolean

    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce

  78. def iterator: Iterator[AminoAcid]

    Definition Classes
    IndexedSeqLike → IterableLike → GenIterableLike

  79. def last: AminoAcid

    Definition Classes
    TraversableLike → GenTraversableLike

  80. def lastIndexOf[B >: AminoAcid](elem: B, end: Int): Int

    Definition Classes
    GenSeqLike

  81. def lastIndexOf[B >: AminoAcid](elem: B): Int

    Definition Classes
    GenSeqLike

  82. def lastIndexOfSlice[B >: AminoAcid](that: GenSeq[B], end: Int): Int

    Definition Classes
    SeqLike

  83. def lastIndexOfSlice[B >: AminoAcid](that: GenSeq[B]): Int

    Definition Classes
    SeqLike

  84. def lastIndexWhere(p: (AminoAcid) ⇒ Boolean, end: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  85. def lastIndexWhere(p: (AminoAcid) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  86. def lastOption: Option[AminoAcid]

    Definition Classes
    TraversableLike → GenTraversableLike

  87. val length: Int

    Definition Classes
    Protein → SeqLike → GenSeqLike

  88. def lengthCompare(len: Int): Int

    Definition Classes
    SeqLike

  89. def lift: (Int) ⇒ Option[AminoAcid]

    Definition Classes
    PartialFunction

  90. def map[B, That](f: (AminoAcid) ⇒ B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic

  91. def max[B >: AminoAcid](implicit cmp: Ordering[B]): AminoAcid

    Definition Classes
    TraversableOnce → GenTraversableOnce

  92. def maxBy[B](f: (AminoAcid) ⇒ B)(implicit cmp: Ordering[B]): AminoAcid

    Definition Classes
    TraversableOnce → GenTraversableOnce

  93. def min[B >: AminoAcid](implicit cmp: Ordering[B]): AminoAcid

    Definition Classes
    TraversableOnce → GenTraversableOnce

  94. def minBy[B](f: (AminoAcid) ⇒ B)(implicit cmp: Ordering[B]): AminoAcid

    Definition Classes
    TraversableOnce → GenTraversableOnce

  95. def mkString: String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  96. def mkString(sep: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  97. def mkString(start: String, sep: String, end: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  98. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  99. final def newBuilder: Builder[AminoAcid, C]

    Definition Classes
    BioSequence → GenericTraversableTemplate → TraversableLike → HasNewBuilder

  100. def nonEmpty: Boolean

    Definition Classes
    TraversableOnce → GenTraversableOnce

  101. final def notify(): Unit

    Definition Classes
    AnyRef

  102. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  103. def orElse[A1 <: Int, B1 >: AminoAcid](that: PartialFunction[A1, B1]): PartialFunction[A1, B1]

    Definition Classes
    PartialFunction

  104. def padTo[B >: AminoAcid, That](len: Int, elem: B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  105. def par: ParSeq[AminoAcid]

    Definition Classes
    Parallelizable

  106. def parCombiner: Combiner[AminoAcid, ParSeq[AminoAcid]]

    Attributes
    protected[this]
    Definition Classes
    SeqLike → TraversableLike → Parallelizable

  107. def partition(p: (AminoAcid) ⇒ Boolean): (Protein, Protein)

    Definition Classes
    TraversableLike → GenTraversableLike

  108. def patch[B >: AminoAcid, That](from: Int, patch: GenSeq[B], replaced: Int)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  109. def permutations: Iterator[Protein]

    Definition Classes
    SeqLike

  110. def prefixLength(p: (AminoAcid) ⇒ Boolean): Int

    Definition Classes
    GenSeqLike

  111. def product[B >: AminoAcid](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  112. def reduce[A1 >: AminoAcid](op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  113. def reduceLeft[B >: AminoAcid](op: (B, AminoAcid) ⇒ B): B

    Definition Classes
    TraversableOnce

  114. def reduceLeftOption[B >: AminoAcid](op: (B, AminoAcid) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  115. def reduceOption[A1 >: AminoAcid](op: (A1, A1) ⇒ A1): Option[A1]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  116. def reduceRight[B >: AminoAcid](op: (AminoAcid, B) ⇒ B): B

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  117. def reduceRightOption[B >: AminoAcid](op: (AminoAcid, B) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  118. def repr: Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  119. def reverse: Protein

    Definition Classes
    SeqLike → GenSeqLike

  120. def reverseIterator: Iterator[AminoAcid]

    Definition Classes
    SeqLike

  121. def reverseMap[B, That](f: (AminoAcid) ⇒ B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  122. def reversed: List[AminoAcid]

    Attributes
    protected[this]
    Definition Classes
    TraversableOnce

  123. def runWith[U](action: (AminoAcid) ⇒ U): (Int) ⇒ Boolean

    Definition Classes
    PartialFunction

  124. def sameElements[B >: AminoAcid](that: GenIterable[B]): Boolean

    Definition Classes
    IterableLike → GenIterableLike

  125. def scan[B >: AminoAcid, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  126. def scanLeft[B, That](z: B)(op: (B, AminoAcid) ⇒ B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike

  127. def scanRight[B, That](z: B)(op: (AminoAcid, B) ⇒ B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  128. def segmentLength(p: (AminoAcid) ⇒ Boolean, from: Int): Int

    Definition Classes
    SeqLike → GenSeqLike

  129. def self: Protein

    Definition Classes
    Protein → BioSequence

  130. def seq: IndexedSeq[AminoAcid]

    Definition Classes
    IndexedSeq → IndexedSeqLike → Seq → GenSeq → GenSeqLike → Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce

  131. def seqBuilder: Builder[AminoAcid, Protein]

    Definition Classes
    Protein → BioSequence

  132. def size: Int

    Definition Classes
    SeqLike → GenTraversableLike → TraversableOnce → GenTraversableOnce

  133. def slice(from: Int, until: Int): Protein

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  134. def sliding(size: Int, step: Int): Iterator[Protein]

    Definition Classes
    IterableLike

  135. def sliding(size: Int): Iterator[Protein]

    Definition Classes
    IterableLike

  136. def sortBy[B](f: (AminoAcid) ⇒ B)(implicit ord: Ordering[B]): Protein

    Definition Classes
    SeqLike

  137. def sortWith(lt: (AminoAcid, AminoAcid) ⇒ Boolean): Protein

    Definition Classes
    SeqLike

  138. def sorted[B >: AminoAcid](implicit ord: Ordering[B]): Protein

    Definition Classes
    SeqLike

  139. def span(p: (AminoAcid) ⇒ Boolean): (Protein, Protein)

    Definition Classes
    TraversableLike → GenTraversableLike

  140. def splitAt(n: Int): (Protein, Protein)

    Definition Classes
    TraversableLike → GenTraversableLike

  141. def startsWith[B](that: GenSeq[B], offset: Int): Boolean

    Definition Classes
    SeqLike → GenSeqLike

  142. def startsWith[B](that: GenSeq[B]): Boolean

    Definition Classes
    GenSeqLike

  143. def stringPrefix: String

    Definition Classes
    TraversableLike → GenTraversableLike

  144. def sum[B >: AminoAcid](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  145. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  146. def tail: Protein

    Definition Classes
    TraversableLike → GenTraversableLike

  147. def tails: Iterator[Protein]

    Definition Classes
    TraversableLike

  148. def take(n: Int): Protein

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  149. def takeRight(n: Int): Protein

    Definition Classes
    IterableLike

  150. def takeWhile(p: (AminoAcid) ⇒ Boolean): Protein

    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike

  151. def thisCollection: IndexedSeq[AminoAcid]

    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike

  152. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, AminoAcid, Col[AminoAcid]]): Col[AminoAcid]

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce

  153. def toArray[B >: AminoAcid](implicit arg0: ClassTag[B]): Array[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  154. def toBuffer[A1 >: AminoAcid]: Buffer[A1]

    Definition Classes
    IndexedSeqLike → TraversableOnce → GenTraversableOnce

  155. def toCollection(repr: Protein): IndexedSeq[AminoAcid]

    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike

  156. def toIndexedSeq: IndexedSeq[AminoAcid]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  157. def toIterable: Iterable[AminoAcid]

    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce

  158. def toIterator: Iterator[AminoAcid]

    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )

  159. def toList: List[AminoAcid]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  160. def toMap[T, U](implicit ev: <:<[AminoAcid, (T, U)]): Map[T, U]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  161. def toSeq: Seq[AminoAcid]

    Definition Classes
    SeqLike → GenSeqLike → TraversableOnce → GenTraversableOnce

  162. def toSet[B >: AminoAcid]: Set[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  163. def toStream: Stream[AminoAcid]

    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce

  164. def toString(): String

    Definition Classes
    BioSequence → SeqLike → TraversableLike → Function1 → AnyRef → Any

  165. def toTraversable: Traversable[AminoAcid]

    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )

  166. def toVector: Vector[AminoAcid]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  167. def transpose[B](implicit asTraversable: (AminoAcid) ⇒ GenTraversableOnce[B]): IndexedSeq[IndexedSeq[B]]

    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  168. def union[B >: AminoAcid, That](that: GenSeq[B])(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  169. def unzip[A1, A2](implicit asPair: (AminoAcid) ⇒ (A1, A2)): (IndexedSeq[A1], IndexedSeq[A2])

    Definition Classes
    GenericTraversableTemplate

  170. def unzip3[A1, A2, A3](implicit asTriple: (AminoAcid) ⇒ (A1, A2, A3)): (IndexedSeq[A1], IndexedSeq[A2], IndexedSeq[A3])

    Definition Classes
    GenericTraversableTemplate

  171. def updated[B >: AminoAcid, That](index: Int, elem: B)(implicit bf: CanBuildFrom[Protein, B, That]): That

    Definition Classes
    SeqLike → GenSeqLike

  172. def view(from: Int, until: Int): SeqView[AminoAcid, Protein]

    Definition Classes
    SeqLike → IterableLike → TraversableLike

  173. def view: SeqView[AminoAcid, Protein]

    Definition Classes
    SeqLike → IterableLike → TraversableLike

  174. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  175. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  176. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  177. def withFilter(p: (AminoAcid) ⇒ Boolean): FilterMonadic[AminoAcid, Protein]

    Definition Classes
    TraversableLike → FilterMonadic

  178. def zip[A1 >: AminoAcid, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Protein, (A1, B), That]): That

    Definition Classes
    IterableLike → GenIterableLike

  179. def zipAll[B, A1 >: AminoAcid, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Protein, (A1, B), That]): That

    Definition Classes
    IterableLike → GenIterableLike

  180. def zipWithIndex[A1 >: AminoAcid, That](implicit bf: CanBuildFrom[Protein, (A1, Int), That]): That

    Definition Classes
    IterableLike → GenIterableLike

Inherited from BioSequence[AminoAcid]

Inherited from Serializable

Inherited from Serializable

Inherited from IndexedSeq[AminoAcid]

Inherited from IndexedSeqLike[AminoAcid, Protein]

Inherited from Seq[AminoAcid]

Inherited from SeqLike[AminoAcid, Protein]

Inherited from GenSeq[AminoAcid]

Inherited from GenSeqLike[AminoAcid, Protein]

Inherited from Iterable[AminoAcid]

Inherited from IterableLike[AminoAcid, Protein]

Inherited from Equals

Inherited from GenIterable[AminoAcid]

Inherited from GenIterableLike[AminoAcid, Protein]

Inherited from Traversable[AminoAcid]

Inherited from GenTraversable[AminoAcid]

Inherited from GenericTraversableTemplate[AminoAcid, IndexedSeq]

Inherited from TraversableLike[AminoAcid, Protein]

Inherited from GenTraversableLike[AminoAcid, Protein]

Inherited from Parallelizable[AminoAcid, ParSeq[AminoAcid]]

Inherited from TraversableOnce[AminoAcid]

Inherited from GenTraversableOnce[AminoAcid]

Inherited from FilterMonadic[AminoAcid, Protein]

Inherited from HasNewBuilder[AminoAcid, Protein]

Inherited from PartialFunction[Int, AminoAcid]

Inherited from (Int) ⇒ AminoAcid

Inherited from AnyRef

Inherited from Any

Ungrouped